2021-09-07-ID90-116
The alignment below was constructed using MAFFT's automatic mode and overlayed with a consensus on top to act as the master sequence. Whenever possible, we first performed a cyclic rotation of all cluster members. Learn more →
Alignment
Built with MAFFT, Cyclope, and CSA
>2021-09-07_Cls_ID90_116_con
AGGGGGGGAACTTACCTGAAAAAGGGCCCC-CGGAAACCTTTCTCAGAATCCAGCGAGAGGCGTAGGAGAGAGGGCCGCGGTGCTCTGGAGTAGAGGCTTCTGCCTTCGAAACACCATCGATCGTCCCTGCTTCTTTTACCTTCTCCTGGCTCTTCCGGTGAGACGCGACCGGTGGCATCACCTCTCGGTTCGTCTTCCAACCTGCTTTTGGTCTATCTGAGCCTCTGCCGCGGATCCTCTCTTGAGCCCCTCTGGGGAATTCTCGAGTTGCCGCAT-GGGCAAGCAAAGAAAAAA-CAAGGC
>KF007321.1
-AGGGAGGAACTTACTTGAAAAAGAGCCCCGGGGAAATCTTTCTCAGAATCCAGCGAGAGGCGT-GGAGAGAGGGCCGCGGTGCTCTGGAGTAGAGGC-TCTGCCTTCGAAACACCATCGATCGTCCCTTCTTC-TTTACCTTCTTCTGGCTCTTCCGATGAGACGCGACCGGTGGCATCACCTCTCGGTTCGTC--CCAACCTGCTTTTGTTCTATCTGAGCCTCTGCCGCGGATCCTCTCTTGAGCCCCTCTGGGGAATTCTCGAGTTGCCGCATAAGGCATGCAAAGAAAAAAACTTGGG
>JF323861.1
AGGGAGGAAACTTACCTGAAAAAGGAGCCC-CGGAAACTTTTCTCAGAATCCAGCGAGAGGCGTAGGAGAGAGGGCCGCGGTGCTCTGGAGTAGAGGCTTCTAGCTTCGAAACACCATCGATCGTCCCTGCTTCTTTTACCTTCTCCTGGCTCTTCGAGTGAGACGCGACCGGTGGCATCACCTCTCGGTTCGTCTTCCAACCTGCTTTTTGTCTATCTGAGCCTCTGCCGCGGATCCTCTCTTGAGCCCCTCTGGGGAATTCTCGAGTTGCCGCAT-GGGCAAGCAAAGAAAAAA-CAAGGC
Circular Alignment
Generated by CSA
Due an error, we were unable to generate a visualization of the cluster. Find out why →
Blocks
Which aligned sequence regions are where
| Name | Accession | Bases | Type | Family | Genus |
|---|---|---|---|---|---|
| Hop stunt viroid isolate HSVd-gb | JF323861.1 | 300 | viroid | Pospiviroidae | Hostuviroid |
| Hop stunt viroid isolate 6075_HSVd_RG | KF007321.1 | 297 | viroid | Pospiviroidae | Hostuviroid |