2021-09-07-ID90-100

The alignment below was constructed using MAFFT's automatic mode and overlayed with a consensus on top to act as the master sequence. Whenever possible, we first performed a cyclic rotation of all cluster members. Learn more →

Alignment

Built with MAFFT, Cyclope, and CSA

Circular Alignment

Generated by CSA

Blocks

Which aligned sequence regions are where

Name Accession Bases Type Family Genus
Pear blister canker viroid PBCVd isolate 41 from Australia AY508474.1 314 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid PBCVd isolate 219 DQ146336.1 314 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid PBCVd isolate 564 DQ146341.1 315 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid PBCVd isolate 565 DQ146342.1 314 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid PBCVd isolate 569 DQ146343.1 316 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid PBCVd isolate 35 DQ186640.1 316 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid PBCVd isolate 4 DQ198084.1 315 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid variant PB-BR1 EF530209.1 316 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid variant PB-BR3 EF530210.1 315 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid variant PB-BR4 EF530211.1 316 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid variant PB-BR5 EF530212.1 316 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate P8 EU932877.1 316 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate Troizeena FJ974083.1 314 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate Veta FJ974085.1 314 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate Angelis Gatsos FJ974086.1 315 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate Korinthos FJ974087.1 315 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate Moreas FJ974103.1 315 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate Aepion FJ974104.1 315 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid clone PBCV3 GU825968.1 314 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid clone PBCV2 GU825969.1 315 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid clone PBCV1 GU825970.1 315 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid clone PBCV5 GU825972.1 317 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid clone PBCV6 GU825973.1 314 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid clone PBCVd-tun7 GU825974.1 314 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid clone PBCVd-tun8 GU825975.1 316 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate PB-TI11 HM233932.1 314 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate PB-TI12 HM233933.1 315 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate PB-TM6 HM233934.1 315 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate PB-TM3 HM233935.1 315 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate PB-TA23 HM233936.1 314 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate PB-TT31 HM233937.1 315 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate YT-2-2 KT183370.1 312 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate YT-6 KT183372.1 312 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate YT-9 KT183373.1 313 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate H4-3 KY048420.1 312 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate JH-3 KY048421.1 312 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate JH-1 KY048422.1 312 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate BYH-1 KY048423.1 312 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate XH-3 KY048424.1 314 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate DTGZ-2 KY048425.1 312 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate DTGZ-1 KY048426.1 312 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate KMS-2 KY048427.1 312 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate KMS-1 KY048428.1 312 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid isolate XG-3 KY048429.1 312 viroid Pospiviroidae Apscaviroid
Pear blister canker viroid NC_001830.1 315 viroid Pospiviroidae Apscaviroid