2021-09-07-ID90-139
The alignment below was constructed using MAFFT's automatic mode and overlayed with a consensus on top to act as the master sequence. Whenever possible, we first performed a cyclic rotation of all cluster members. Learn more →
Alignment
Built with MAFFT, Cyclope, and CSA
>2021-09-07_Cls_ID90_139_con
TTCCTGTGGTGCTCACCTGACCCTGCAGGCATCAAGAAAAAAGAATGGCGCGGAGGAGAAGAAGTCCTTCAGGGATCCCCGGGGAAACCTGGAGGAAGTCGAGGTCGGGGGCTTCGGACTACTCCTTCGTGAGACAGGAGTAATCCCCGCTGAAACAGGGTTTTCACCCTTCCTTTCTTCGGGTTTCCTTCCTCTCGCCTGGAGAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGAAG
>KC707564.1
TTCCTGTGGTGCTCACCTGACCCTGCAGGCATCAAGAAAAAAGAATGGCGCGGAGGAGAAGAAGTCCTTCAGGGATCCCCGGGGAAACCTGGAGGAAGTCGAGGTCGGGGGCTTCGGACTACTCCTTCGTGAGACAGGAGTAATCCCCGCTGAAACAGGGTTTTCACCCTTCCTTTCTTCGGGTTTCCTTCCTCTCGCCTGGAGAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGAAG
Circular Alignment
Generated by CSA
Due an error, we were unable to generate a visualization of the cluster. Find out why →
Blocks
Which aligned sequence regions are where
Due an error, we were unable to generate a visualization of the cluster. Find out why →
| Name | Accession | Bases | Type | Family | Genus |
|---|---|---|---|---|---|
| Tomato apical stunt viroid isolate SJ2PL, partial sequence | KC707564.1 | 264 | viroid | Pospiviroidae | Pospiviroid |