2021-09-07-ID90-137
The alignment below was constructed using MAFFT's automatic mode and overlayed with a consensus on top to act as the master sequence. Whenever possible, we first performed a cyclic rotation of all cluster members. Learn more →
Alignment
Built with MAFFT, Cyclope, and CSA
>2021-09-07_Cls_ID90_137_con
GGAGAGAGGGCCGCGGTGCTCTGGAGTAGAGGCTTCTTGCTTCGAAACACCATCGATCGTCCCTTCTTCTTTTACCTTCTCCTGGCTCTTCGAGTGAGACGCGACCGGTGGCATCACCTCTCGGTTCGTCTTCCAACCTGCTTTTTGTCTATCTGAGCCTCTGCCGCGGATCCTCTCTTGAGCCCCTCTGGGGAATTCTCGAGTTGCCGCATGGGCAAGCAAAGAAAAAACAAGGCAGGGAGGAGACTTACCTGAGAAAGGACGCCCGGGGCAACTCTTCTCAGAATCCAGCGAGAGGCGTA
>KC584015.1
GGAGAGAGGGCCGCGGTGCTCTGGAGTAGAGGCTTCTTGCTTCGAAACACCATCGATCGTCCCTTCTTCTTTTACCTTCTCCTGGCTCTTCGAGTGAGACGCGACCGGTGGCATCACCTCTCGGTTCGTCTTCCAACCTGCTTTTTGTCTATCTGAGCCTCTGCCGCGGATCCTCTCTTGAGCCCCTCTGGGGAATTCTCGAGTTGCCGCATGGGCAAGCAAAGAAAAAACAAGGCAGGGAGGAGACTTACCTGAGAAAGGACGCCCGGGGCAACTCTTCTCAGAATCCAGCGAGAGGCGTA
>KC584019.1
GGAGAGAGGGCCGCGGTGCTCTGGAGTAGAGGCTTC-TGCTTCGAAACACCATCGATCGTCCCTTCTTC-TTTACCTTCTCCTGGCTCTTCGAGTGAGACGCGACCGGTGGCATCACCTCTCGGTTCGTCTTCCAACCTGCTTTTTGTCTATCTGAGCCTCTGCCGCGGATCCTCTCTTGAGCCCCTCTGGGGAATTCTCGAGTTGCCGCATGGGCAAGCAAAGAAAAAACAAGGCAGGGAGGAGACTTACCTGAGAAAGGACGCCCGGGGCAACTCTTCTCAGAATCCAGCGAGAGGCGT-
Circular Alignment
Generated by CSA
Due an error, we were unable to generate a visualization of the cluster. Find out why →
Blocks
Which aligned sequence regions are where
| Name | Accession | Bases | Type | Family | Genus |
|---|---|---|---|---|---|
| Hop stunt viroid isolate Sy SFC3 clone 13 | KC584015.1 | 302 | viroid | Pospiviroidae | Hostuviroid |
| Hop stunt viroid isolate Sy A3 clone 22 | KC584019.1 | 299 | viroid | Pospiviroidae | Hostuviroid |