2021-09-07-ID90-134
The alignment below was constructed using MAFFT's automatic mode and overlayed with a consensus on top to act as the master sequence. Whenever possible, we first performed a cyclic rotation of all cluster members. Learn more →
Alignment
Built with MAFFT, Cyclope, and CSA
>2021-09-07_Cls_ID90_134_con
AACACCATCGATCGTCCCTTCTTCTTTACCTTCTTCTGGCTCTTCCGATGAGACGCGACCGGTGGCATCACCTCTCGGTTCGTCCCAACCTGCTTTTTGTCTATCTGAGCCTCTGCCGCGGATCCTCTCTTGAGCCCCTCTGGGGAATTCTCGAGTTGCCGCATCAGGCAAGCAAAGAAAAAACAAGGCAGGGAGGTACTTACCTGAGAAAGGAGCCCCGGGGCAACTCTTCTCAGAATCCAGCGCGAGGCGTGGAGAGAGGGCCGCGGTGCTCTGGAGTAGAGGCTCTGCTTCGG
>KC427095.1
AACACCATCGATCGTCCCTTCTTCTTTACCTTCTTCTGGCTCTTCCGATGAGACGCGACCGGTGGCATCACCTCTCGGTTCGTCCCAACCTGCTTTTTGTCTATCTGAGCCTCTGCCGCGGATCCTCTCTTGAGCCCCTCTGGGGAATTCTCGAGTTGCCGCATCAGGCAAGCAAAGAAAAAACAAGGCAGGGAGGTACTTACCTGAGAAAGGAGCCCCGGGGCAACTCTTCTCAGAATCCAGCGAGAGGCGTGGAGAGAGGGCCGCGGTGCTCTGGAGTAGAGGCTCTGCTTCAG
>Y08438.1
AACACCATCGATCGTCCCTTCTTCTTTACCTTCTTCTGGCTCTTCCGATGAGACGCGACCGGTGGCATCACCTCTCGGTTCGTCCCAACCTGCTTTTTGTCTATCTGAGCCTCTGCCGCGGATCCTCTCTTGAGCCCCTCTGGGGAATTCTCGAGTTGCCGCATCAGGCAAGCAAAGAAAAAACAAGGCAGGGAGGTACTTACCTGAG-AAGGAGCCCCGGGGCAACTCTTCTCAGAATCCAGC-CGAGGCGTGGAGAGAGGGCCGCGGTGCTCTGGAGTAGAGGCTCTGCTTCGA
Circular Alignment
Generated by CSA
Due an error, we were unable to generate a visualization of the cluster. Find out why →
Blocks
Which aligned sequence regions are where
| Name | Accession | Bases | Type | Family | Genus |
|---|---|---|---|---|---|
| Hop stunt viroid isolate HSVd-WA-1 | KC427095.1 | 296 | viroid | Pospiviroidae | Hostuviroid |
| Hop stunt viroid, isolate Rouge de Rousillon D08 | Y08438.1 | 294 | viroid | Pospiviroidae | Hostuviroid |