2021-09-07-ID90-122
The alignment below was constructed using MAFFT's automatic mode and overlayed with a consensus on top to act as the master sequence. Whenever possible, we first performed a cyclic rotation of all cluster members. Learn more →
Alignment
Built with MAFFT, Cyclope, and CSA
>2021-09-07_Cls_ID90_122_con
TATAAAAGAAAAAGAAATGAGGCGAAGAAGTCCTTCAGGGATCCCCGGGGAAACCTGGAGGAAGTCCGACGAGATCGCGGCTGGGGCTTAGGACCCCACTCCTGCGAGACAGGAGTAATCCTAAACAGGGTTTTCACCCTTCCTTTAGTTTCCTTCCTCTCCTGGAGAGGTCTTCTGCCCTAGCCCGGTCTTCGAAGCTTCCTTTGGCTACTACCCGGTGGAAACAACTGAAGCTTCAACGCCTTATTTTCCATATCTTCTTTAGCACCGGGCTAGGGAGTAACCCTCGTGGAACCTTAGTTTTGTTCCCTCGGGACTTACTTGTGGTTCCTGTGGTGCACTCCTGACCCAGCCGC
>JQ809258.1
TATAAAAGAAAAAGAAATGAGGCGAAGAAGTCCTTCAGGGATCCCCGGGGAAACCTGGAGGAAGTCCGACGAGATCGCGGCTGGGGCTTAGGACCCCACTCCTGCGAGACAGGAGTAATCCTAAACAGGGTTTTCACCCTTCCTTTAGTTTCCTTCCTCTCCTGGAGAGGTCTTCTGCCCTAGCCCGGTCTTCGAAGCTTCCTTTGGCTACTACCCGGTGGAAACAACTGAAGCTTCAACGCCTTTTTTTCCATATCTTCTTTAGCACCGGGCTAGGGAGTAAGCC-CGTGGAACCTTAGTTTTGTTCCCTCGGGACTTACTTGTGGTTCCTGTGGTGCACTCCTGACCCTGCTGC
>JQ809264.1
TATAAAAGAAAAAGAAATGAGGCGAAGAAGTCCTTCAGGGATCCCCGGGGAAACCTGGAGGAAGTCCGACGAGATCGCGGCTGGGGCTTAGGACCCCACTCCTGCGAGACAGGAGTAATCCTAAACAGGGTTTTCACCCTTCCTTTAGTTTCCTTCCTGTCCTGGAGAGGTCTTGTGCCCTAGCCCGGTCTTCGAAGGTTCCTTTGGCTACTACCCGGTGGAAACAACTGAAGCTTCAACGCCTTATTTTCCATATCTTCTTTAGCACCGGGTTAGGGAGTAACCCTCGTGGAACCTTAGTTTTGTTCCCTCGGGACTTACTTGTGGTTCCTGTGGTGCACTCCTGACCCAGCCGG
Circular Alignment
Generated by CSA
Due an error, we were unable to generate a visualization of the cluster. Find out why →
Blocks
Which aligned sequence regions are where
| Name | Accession | Bases | Type | Family | Genus |
|---|---|---|---|---|---|
| Chrysanthemum stunt viroid isolate US1.3 | JQ809258.1 | 355 | viroid | Pospiviroidae | Pospiviroid |
| Chrysanthemum stunt viroid isolate US1.9 | JQ809264.1 | 356 | viroid | Pospiviroidae | Pospiviroid |