2021-09-07-ID90-112
The alignment below was constructed using MAFFT's automatic mode and overlayed with a consensus on top to act as the master sequence. Whenever possible, we first performed a cyclic rotation of all cluster members. Learn more →
Alignment
Built with MAFFT, Cyclope, and CSA
>2021-09-07_Cls_ID90_112_con
CGAGGGTGAAAGCC-CGTGGAACCC-TGGAAGGAGTCCCTCGGGAACTTTCTTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGAA---TGGCGCGGGGGGGAAGAAGTCCTTCAGGGATCCCC--GGGGAAA-CCTGGAGGAAGT-CGAGGTCGGGGGCTTCGGACCACTCCTCCGTGAGACAGGAGTAATCCCCGCTGAAACAGGGTTT-TCACCCTTCCTTTCTTCGGGTTTCCTTCCTCTCGCCT-GGAGAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGAAGCTTCAACCCCCCCGCGCTTTTTCTCTATCTTTGTTGCTCTCCGGG-----------------------------------
>NC_001553.1
CGAGGGTGAAAGCC-CGTGGAACCC-TGAATG--GTCCCTCGGGATCTTTCGTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGAT---AGGAGCGGGAAGGAAGAAGTCCTTCAGGGATCCCC--GGGGAAA-CCTGGAGGAAGT-CGAGGTCGGGGGCTTCGGATCATTCCTGGTTGAGACAGGAGTAATCCCAGCTGAAACAGGGTTT-TCACCCTTCCTTTCTTCTGGTTTCCTTCCTCTCGCC---GGAAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGAAGCTTCCACTTCCACGCTCTTTTTCTCTATCTTTGTTGCTCTCCGGG-----------------------------------
>MK286920.1
CGA--------------------------------------GGGACTCCTTCCAGGGTTCCACGGGCTTTCACCCTCGCCCGGAGAGCAACAAAGATAGAGAAA--AAGCGCGAG-AGAGATTGAAGCTTCAGTTGTTTCCACCGGGTAG-TCTCCATATAGA-----------------AGCTCACCTTCCGGCGAGAGGAAGGAAACCAGAAGAAAGGAAGGATGA-AAATCCTGTTTCTGCTGGGATTACTCCTGTCTCAACCAGGAATGATCCGAAGCCCCCGACCTCGACTTCCTCC---AGGTTTCCCCGGGGATCCCAGAAGGACTTCTTCTCCTCCGCGCCT-ATCTTTTTTCTTGATGCCTGCAGGGTCAGGTGAGCACCACAGGAACCTCAAGAAAGTTCC
>MK286921.1
CGA--------------------------------------GGGACTCCTTCCAGGGTTCCACGGGCTTTCACCCTCGCCCGGAGAGCAACAAAGATAGAGAAA--AAGCGCGAG-AGAGATTGAAGCTTCAGTTGTTTCCACCGGGTAG-TCTCCATATAGA-----------------AGCTCACCTTCCGGCGAGAGGAAGGAAACCAGAAGAAAGGAAGGATGA-AAATCCTGTTTCTGCTGGGATTACTCCTGTCTCAACCAGGAATGATCCGAAGCCCCCGACCTCGACTTCCTCC---AGGTTTCCCCGGGGATCCCTGAAGGACTTCTTCTCCTCCGCGCC--ATCTTTTTTCTTGATGCTTGCAGGGTCAGGTGAGCACCACAGGAACCTCAAGAAAGTTCC
>MK286922.1
CGA--------------------------------------GGGACTCCTTCCAGGGTTCCACGGGCTTTCACCCTCGCCCGGAGAGCAACAAAGATAGAGAAA--AAGCGCGAG-AGAG-TTGAAGCTTCAGTTGTTTCCACCGGGTAG-TCTCCATAGAGA-----------------AGCTCACCTTCCGGCGAGAGGAAGGAAACCAGAAGAAAGGAAGGATGA-AAATCCTGTTTCTGCTGGGATTACTCCTGTCTCAACCAGGAATGATCCGAAGCCCCCGACCTCGACTTCCTCC---AGGTTTCCCCGGGGATCCCTGAAGGACTTCTTCTCCTCCGCGCCT-ATCTTTTTTCTTGATGCCTGCAGGGTCAGGTGAGCACCACAGGAACCTCAAGAAAGTTCC
>MG132055.1
CGAGGGTGAAAGCC-CGTGGAACCC-TGGAAGGAGTCCCTCGGGAACTTTCTTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGAT---AGGAGCGGG-AGGAAGAAGTCCTTCAGGGATCCCC--GGGGAAA-CCTGGAGGAAGT-CGAGGTCGGGGGCTTCGGATCATTCCTGGTTGAGACAGGAGTAATCCCAGCTGAAACAGGGTTT-TCACCCTTCCTTTCTTCTGGTTTCCTTCCTCTCGCC---GGAAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGAAGCTTCCACTCCT-CGCTCTTTTTCTCTATCTTTGTTGCTCTCCGGG-----------------------------------
>MG132056.1
CGAGGGTGAAAGCC-CGTGGAACCC-TGGAAGGAGTCCCTCGGGAACTTTCTTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGAT---AGGAGCGGG-AGGAAGAAGTCCTTCAGGGATCCCC--GGGGAAA-CCTGGAGGAAGT-CGAGGTCGGGGGCTTCGGATCATTCCTGGTTGAGACAGGAGTAATCCCAGCAGAAACAGGGTTT-TCACCCTTCCTTTCTTCTGGTTTCCTTCCTCTCGCC---GGAAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGCAGCTTCCACTCCT-CGCTCTTTTTCTCTATCTTTGTTGCTCTCCGGG-----------------------------------
>MG132057.1
CGAGGGTGAAAGCC-CGTGGAACCC-TGGAAGGAGTCCCTCGGGAACTTTCTTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAATAACTTTTCCAGGAGCGGG-AGGAAGAAGTCCTTCAGGGATCCCCG-GGGGAAA-CCTGGAGGAAGT-CGAGGTCGGGGGCTTCGGATCATTCCTGGTTGAGACAGGAGTAATCCCAGCTGAAACAGGGTTT-TCACCCTTCCTTTCTTCTGGTTTCCTTCCTCTCGCC---GGAAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGAAGCTTCCACTCCA-CGCTCTTTTTCTCTATCTTTGTTGCTCTCCGGG-----------------------------------
>MG132058.1
CGAGGGTGAGAGCC-CGTGGATCCC-TGGAAGGAGTCCCTCGGGAACTTTGTTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGATA--TGGCGCCGGGAGGAAGAAGTCCTTCAGGGATCCCC--GGGGAAACCCTGGAGGAAGT-CGAGGTCGGGGGCTTCGGATCATTCCTGGTTGAGACAGGAGTAATCCCAGCTGAAACAGGGTTT-TCACCCTTCCTTTCTTCTGGTTTCCTTCCTCTCGCC---GGAAGGTCTTCGGCGCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGAAGCTTCGACTCCACGGCTCTTTTTCTCTATCTTTGTTGCTCTGGGGG-----------------------------------
>KY810784.1
CGAGGGTGAAAGCC-CGTGGAACCC-TAGTAAGAGTCCCTCGGGAACTTTCTTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGAT---AGGCGCGGA-GAGAAGAAGTCCTTCAGGGATCCCC--GGGGAAA-CCTGGAGGAAGT-CGAGGTCGGGGGCTTCGGACTACTCCTTCGTGAGACAGGAGTAATCCCCGCAGAAACAGGATTT-TCATCCTTCCTTTCTTCGGGTTTCCTTCCTCTCGCCT-GGAGAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGAAGCTTCAACTCCC-TGCGCTTTTTCTCTATCTTTGTTGCTCTCCGGG-----------------------------------
>KX579067.1
CGAGGGTGAAAGCC-CGTGGAACCC-TAGTAAGAGTCCCTCGGGAACTTTCTTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGAT---AGGCGCGGGAGCGAAGAAGTCCTTCAGGGATCCCC--GGGGAAA-CCCGAAGGAAGT-CGAGGACGGGGGCTTCCGACTACTCCCGTGTGAGACAGGAGTAATCCCAGCTGAAACAGGGTTT-TCACCCTTCCTTTCTTCTGGTTTCCTTCCTCTCGCCT-GGAGAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTAAGGAGACTACCCGGTGGATACAACTGAAGCTTCAACCTCCACGCGCTTTTTCTCTATCTTTGTTGCTCTCCGGG-----------------------------------
>HG916812.1
CGAGGGTGAAAGCC-CGTGGAACCC-TGGAAGGAGTCCCTCGGGAACTTTCTTGAGGTTCCGGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGAA---TGGCGCGGAGGAGAAGAAGTCCTTCAGGGATCCCC--GGGGAAA-CCTGGAGGAAGT-CGAGGTCGGGGGCTTCGGACTACTCCTTCGTGAGACAGGAGTAATCCCCGCTGAAACAGGGTTT-TCACCCTTCCTTTCTTCGGGTTTCCTTCCTCTCGCCT-GGAGAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGAAGCTTCAACCCTCTCGCGCTTTTTCTCTATCTTTGTTGCTCTCCGGG-----------------------------------
>HG739071.1
CGAGGGTGAAAGCC-CGTGGAACCC-TGGAAGGAGTCCCTCGGGAACTTTCTTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGAA---TGGCGCGGAGGAGAAGAAGTCCTTCAGGGATCCCC--GGGGAAA-CCTGGAGGAAGT-CGAGGTCGGGGGCTTCGGACTACTCCTTCGTGAGACAGGAGTAATCCCCGCTGAAACAGGGTTT-TCACCCTTCCTTTCTTCGGGTTTCCTTCCTCTCGCCT-GGAGAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGAAGCTTCAACTCTCTCGCGCTTTTTCTCTATCTTTGTTGCTCTCCGGG-----------------------------------
>HG739072.1
CGAGGGTGAAAGCC-CGTGGAACCC-TGGAAGGAGTCCCTCGGGAACTTTCTTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGAA---TGGCGCGGAGGAGAAGAAGTCCTTCAGGGATCCCC--GGGGAAA-CCTGGAGGAAGT-CGAGGTCGGGGGCTTCGGACTACTCCTTCGTGAGACAGGAGTAATCCCCGCTGAAACAGGGTTT-TCACCCTTCCTTTCTTCGGGTTTCCTTCCTCTCGCCT-GGAGAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGAAGCTTCGACCCTCTCGCGCTTTTTCTCCTTCTTTGTTGCTCTCCGGG-----------------------------------
>KF484878.1
CGAGGGTGAAAGCC-CGTGGAACCC-TGGAAGGAGTCCCTCGGGAACTTTCTTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGAA---TGGCGCGGAGGAGAAGAAGTCCTTCAGGGATCCCC--GGGGAAA-CCTGGAGGAAGT-CGAGGTCGGGGGCTTCGGACTACTCCTTCGTGAGACAGGAGTAATCCCCGCTGAAACAGGGTTT-TCACCCTTCCTTTCTTCGGGTTTCCTTCCTCTCGCCT-GGAGAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGAAGCTTCAACCCTCTCGCGCTTTTTCTCTATCTTTGTTGCTCTCCGGG-----------------------------------
>KF484879.1
CGAGGGTGAAAGCC-CGTGGAACCC-TGGAAGGAGTCCCTCGGGAACTTTCTTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGAA---TGGCGCGGAGGAGAAGAAGTCCTTCAGGGATCCCC--GGGGAAA-CCTGGAGGAAGT-CGAGGTCGGGGGCTTCGGACTACTCCTTCGTGAGACAGGAGTAATCCCCGCTGAAACAGGGTTT-TCACCCTTCCTTTCTTCGGGTTTCCTTCCTCTCGCCT-GGAGAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGAAGCTTCATCCCTCTCGCGCTTTTTCTCTATCTTTGTTGCTCTCCGGG-----------------------------------
>JN872144.1
CGAGGGTGAAAGCC-CGTGGAACCC-TGGAAGGAGTCCCTCGGGAACTTTCTTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGAA---TGGCGCGGAGGAGAAGAAGTCCTTCAGGGATCCCC--GGGGAAA-CCTGGAGGAAGT-CGAGGTCGGGGGCTTCGGACTACTCCTTCGTGAGACAGGAGTAATCCCCGCTGAAACAGGGTTT-TCACCCTTCCTTTCTTCGGGTTTCCTTCCTCTCGCCT-GGAGAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGATACAACTGAAGCTTCATCCCTCTCGCGCTTTTTCTCTATCTTTGTTGCTCTCCGGG-----------------------------------
>HQ667139.1
CGAGGGTGAAAGCC-CGTGGAACCC-TGGAAGGAGTCCCTCGGGAACTTTCTTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGAA---TGGCGCGGAGGAGAAGAAGTCCTTCAGGGATCCCC--GGGGAAA-CCTGGAGGAAGT-CGAGGTCGGGGGCTTCGGACTACTCCTTCGTGAGACAGGAGTAATTCCCGCCGAAACAGGGTTTATCACCCTTCCTTTCTTCGGGTGTCCTTCCTCTCGCCT-GGAGAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGAAGCTTCAACCCTCTCGCGCTTTTTCTCTATCTTTGTTGCTCTCCGGG-----------------------------------
>HQ667141.1
CGAGGGTGAAAGCC-CGTGGAACCC-TGGAAGGAGTCCCTCGGGAACTTTCTTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGAA---TGGCGCGGAGGAGAAGAAGTCCTTCAGGGATCCCC--GGGGAAA-CCTGGAGGAAGT-CGAGGTCGGGGGCTTCGGACTACTCCTTCGTGAGACAGGAGTAATTCCCGCCGAAACAGGGTTT-TCACCCTTCCTTTCTTCGGGTGTCCTTCCTCTCGCCT-GGAGAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGAAGCTTCCTTCCTCTCGCGCTTTTTCTCTATCTTTGTTGCTCTCCGGG-----------------------------------
>GU911351.1
CGAGGGTGAAAGCC-CTTGGAACCC-TGGAAGGAGTCCCTCGGGAACTTTCTTGAGGTTCCTGTGGTGCTCACCTGAGCCCTGCAGGCATCAAGAAAAAAGAA---TGGCGCGGAGGAGAAGAAGTCCTTCAGGGATCCCC--GGGGAAA-CCTGGAGGAAGT-CGAGGAC-GGGGCTTCGGACTACTCCTTCGTGAGACAGGAGTAATCCCCGCTGAAACAGGGTTT-TCACCCTTCCTTTCTTCGGGTTTCCTTCCTCTCGCCT-GGAGAGGTCTTCGGCCCTCGCCCGGAGCTTCACTCTGGAGACTACCCGGTGGATACAACTGAAGCTTCAACCCTCTCGCGCTTTTTCTCTATCTTCGTTGCTCTCCGGG-----------------------------------
>AM774355.1
CGAGGGTGAAAGCC-CGTGGAACCC-TGGAAGGAGTCCCTCGGGAACTTTCTTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGAA---TGGCGCGGAGGAGAAGAAGTCCTTCAGGGATCCCC--GGGGAAA-CCTGGAGGAAGT-CGAGGTCGGGGGCTTCGGACTACTCCTTCGTGAGACAGGAGTAATCCCCGCTGAAACAGGGTTT-TCACCCTTCCTTTCTTCGGGTTTCCTTCCTCTCGCCT-GGAGAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGAAGCTTCAACCCTCTCGCGTTTTTTCTCTATCTTTGTTGCTCTCCGGG-----------------------------------
>EF551346.1
CGAGGGTGAAAGCC-CGTGGAACCC-TTGAAAAGGTCCCTCGGGAACTTTCTTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGAA---TGGCGCCAG-GAGAAGAAGTCCTTCAGGGATCCCC--GGGGAAA-CCTGGAGGAAGT-CGAGGTCGGGGGCTTCGGATCATTCCTGGTTGAGACAGGAGTAATCCCAGCTGAAACAGGGTTT-TCACCCTTCCTTTCTTCTGGTTTCCTTCCTCTCGCC---GGAAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGAAGCTTCGACTCCACGGCGCTTTTTCTCTATCTTTGTTGCTCTCCGGG-----------------------------------
>EF051631.1
CGAGGGTGAAAGCC-CGTGGAACCCTTGAAAAGAGTCCCTCGGGAACTTTCTTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGAA---TGGCGCCAG-GAGAAGAAGTCCTTCAGGGATCCCC--GGGGAAA-CCTGGAGGAAGT-CGAGGTCGGGGGCTTCGGATCATTCCTGGTTGAGACAGGAGTAATCCCAGCTGAAACAGGGTTT-TCACCCTTCCTTTCTTCTGGTTTCCTTCCTCTCGCC---GGAAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGAAGCTTCGACTCCACGGCGCTTTTTCTCTATCTTTGTTGCTCTCCGGG-----------------------------------
>EF192395.1
CGAGGGTGAAAGCCTCGTGGAACCC-TGGAAGGAGTCCCTCGGGAACTTTCTTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGAA---TGGCGCGGAGGAGAAGAAGTCCTTCAGGGATCCCC--GGGGAAA-CCTGGAGGAAGT-CG-----GGGGCCTCGCATCTACTCCTTCGTGAGACAGGAGTAATCCCCGCTGAAACAGGGTTT-TCACCCTTCCTTTCTTCGGGTTTCCTTCCTCTCGCCT-GGAGAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGATACAACTGAAGCTTCATCCCTCACGCGCTTTTTCTCTATCTTTGTTGCTCTCCGGG-----------------------------------
>DQ144506.1
CGAGGGTGAAAGCC-CGTGGAACCC-TAGTAAGAGTCCCTCGGGAACTTTCTTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGAT---AGGCGCGGA-GAGAAGAAGTCCTTCAGGGATCCCC--GGGGAAA-CCTGGAGGAAGTCCGAGGTCGGGGGCTTCGGACTACTCCTTCGTGAGACAGGAGTAATCCCCGCTGAAACAGGATTT-TCATCCTTCCTTTCTTCGGGTTTCCTTCCTCTCGCCT-GGAGAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGAAGCTTCAACTCTA-CGCGCTTTTTCTCTATCTTTGTTGCTCTCCGGG-----------------------------------
>AY062121.1
CGAGGGTGAAAGCC-CGTGGAACCC-TGGAAGGAGTCCCTCGGGAACTTTCTTGAGGTTCCTGTGGTGCTCACCTGA-CCCTGCAGGCATCAAGAAAAAAGAA---TGGCGCGGAGGAGAAGAAGTCCTTCAGGGATCCCC---GGGAAA-CCTGGAGGAAGT-CGAGGTCGGGGGCTTCGGACTACTCCTTCGTGAGACAGGAGTAATCCCCGCTGAAACAGGGTTT-TCACCCTTCCTTTCTTCGGGTTTCCTTCCTCTCGCCT-GGAGAGGTCTTCGGCCCTCGCCCGGAGCTTCTCTCTGGAGACTACCCGGTGGAAACAACTGAAGCTTCATCCCTCACGCGCTTTTTCTCTATCTTTGTTGCTCTCCGGG-----------------------------------
Circular Alignment
Generated by CSA
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Blocks
Which aligned sequence regions are where
