2021-09-07-ID90-106

The alignment below was constructed using MAFFT's automatic mode and overlayed with a consensus on top to act as the master sequence. Whenever possible, we first performed a cyclic rotation of all cluster members. Learn more →

Alignment

Built with MAFFT, Cyclope, and CSA

>2021-09-07_Cls_ID90_106_con
TTTGGAGAGCACTCCGGCCCGAAAGGATGAGAAGTCCCCAGAGGGAGGAATCCACACGGAGAAAAGCAGAAAAATCACCTCCAGAGGACCCCTTCAGCGAACAGAGAGCACCGAGACGCGATAGGAGTAAGACCATAGCGATAGGGGGAGATGCTAGGAGTTAGAGGAGACCAAAGCGAGGAGAAAAGCAAAGAAAGCAACGGGGCTAGCGAGTGGATGTTCCGCCCCCCGAGAGGGGACGAGTGAGGCTTATCCCGGAGCATTCGGCGAATCGTCCCCACATAGCAGGTTCCAGGACCCCCTTCCAAAATAACCGAGGGGGGTGGCTTGGACCCTGGGGGGGCCACTGGAGCCATGGGATGCCCTTCCCGATTCCGTCCATCCCTTCCCCCCGAGGGTCGCCCAGGAATGGCGGGACCCCACCTCAGCGAGGTCCGCGTTCCATCCTTTCTTACCTGATGGCCGGCATGGTCCCAGCCTCCTCGCTGGCGCCGGCTGGGCAACATTCCGAGGGGACCGTCCCCTCGGTAATGGCGAATGGGACCCAGAAATCTCTCTAGATTCCCAGAGAGAATCGAGAGAAAACTGGCTCTCCCTTAGCCATCCGAGTGGACGTATGTCCTCCTTCGGATGCCCAGGTCGGACCGCGAGGAGGTGGAGATGCCATGCCGACCCGAAGAGGAAAGAAGGACGCGAGACGCGAACTCGTGAGTGGAAACCCGCTTTATTCACTGGGGTCGACAACTCTGGGGAGAAAAGGGAGGATCGGCTGGGAAGAGTATATCCTATGGGAATCCGTGGTTTCCCCTCACGTCCAGCCCCTCCCCGGTTCTGGCGAAGGGGGACTCCGGAACACCTTGCATGCTGGGGACGAAGCCGCCTCCGGGCGCTCCCCTCGATCCACCTTCGAGGGGGTTCACATCCCCAACTCGCGGGCCGGCTACTCTTCTTTTCCTTTCCTCGTCTTCTCTGGTCAACCTCTTGAGTTCCTCTTCTTCCTCCTTGCTGAGGCTCTTCCCTCCGGCGCTCAGCTGCTTTCTCTTGTTCTCGAGGGCCTTCCTTCGTCGGTGATCCTGCCTCTCCTTGTCGGTGAACCCTCCCTTGGAGGAACTCTTCCCAGGTCCGGAGTCTACCTCCATCTGGTCTGTTCGGGCCCTCTTCGCCGGGGGAGCCCCCTCTCCGTCCTTGTCCTTCTTTCCGAGAATTCCTTTGACGTTTCCTAGCCAGGGATTTTCGTCCTCAAGTTTCTTGATTTTCTTCTTAACCTTCCGGAGATCTCTCTCGAGTTCCTCTAACTTCTTTCTTCCATCTACCCACTGCTCGAGGATCTGCTCTCTGCCCCCGCGGTTCTTCCTCGACTCGGACCGGCTCATCTCGACAAGAGGCGGCGGTCCTCAGTGCTCTTACTCTTTTCTGTAAAGAGGAGACTGCTGGACCCGCCGCCCAAGTTCGAGCATGAGCCAAGTTCCGAGCGAGGAGATCGCGAGGGGCAGGAACAGCTCCCGAGAGGGGATAAATGGTAAAGAAGCATTGGAACGTCGGAGAAAACCCTCCCAAGAAGGAAAAAAGAGAAAGCAAGAAGCGGACGATTTTCCCCATAACGCTGGAGACGTCCTGGAAGGGGAAAGAGGACGAGCGGAATAAAGGGGGCGGGCCTCCCGATCCGAGGGGCCCAACCACCAAG
>HQ005369.1
TTTGGAGAGCACTCCGGCCCGAAAGGATGAGAAGTCCCCAGAGGGAGGAATCCACACGGAGAAAAGCAGAAAAATCACCTCCAGAGGACCCCTTCAGCGAACAGAGAGCACCGAGACGCGATAGGAGTAAGACCATAGCGATAGGGGGAGATGCTAGGAGTTAGAGGAGACCAAAGCGAGGAGAAAAGCAAAGAAAGCAACGGGGCTAGCGAGTGGATGTTCCGCCCCCCGAGAGGGGACGAGTGAGGCTTATCCCGGAGCATTCGGCGAATCGTCCCCACATAGCAGGTTCCAGGACCCCCTTCCAAAATAACCGAGGGGGGTGGCTTGGACCCTGGGGGGGCCACTGGAGCCATGGGATGCCCTTCCCGATTCCGTCCATCCCTTCCCCCCGAGGGTCGCCCAGGAATGGCGGGACCCCACCTCAGCGAGGTCCGCGTTCCATCCTTTCTTACCTGATGGCCGGCATGGTCCCAGCCTCCTCGCTGGCGCCGGCTGGGCAACATTCCGAGGGGACCGTCCCCTCGGTAATGGCGAATGGGACCCAGAAATCTCTCTAGATTCCCAGAGAGAATCGAGAGAAAACTGGCTCTCCCTTAGCCATCCGAGTGGACGTATGTCCTCCTTCGGATGCCCAGGTCGGACCGCGAGGAGGTGGAGATGCCATGCCGACCCGAAGAGGAAAGAAGGACGCGAGACGCGAACTCGTGAGTGGAAACCCGCTTTATTCACTGGGGTCGACAACTCTGGGGAGAAAAGGGAGGATCGGCTGGGAAGAGTATATCCTATGGGAATCCGTGGTTTCCCCTCACGTCCAGCCCCTCCCCGGTTCTGGCGAAGGGGGACTCCGGAACACCTTGCATGCTGGGGACGAAGCCGCCTCCGGGCGCTCCCCTCGATCCACCTTCGAGGGGGTTCACATCCCCAACTCGCGGGCCGGCTACTCTTCTTTTCCTTTCCTCGTCTTCTCTGGTCAACCTCTTGAGTTCCTCTTCTTCCTCCTTGCTGAGGCTCTTCCCTCCGGCGCTCAGCTGCTTTCTCTTGTTCTCGAGGGCCTTCCTTCGTCGGTGATCCTGCCTCTCCTTGTCGGTGAACCCTCCCTTGGAGGAACTCTTCCCAGGTCCGGAGTCTACCTCCATCTGGTCTGTTCGGGCCCTCTTCGCCGGGGGAGCCCCCTCTCCGTCCTTGTCCTTCTTTCCGAGAATTCCTTTGACGTTTCCTAGCCAGGGATTTTCGTCCTCAAGTTTCTTGATTTTCTTCTTAACCTTCCGGAGATCTCTCTCGAGTTCCTCTAACTTCTTTCTTCCATCTACCCACTGCTCGAGGATCTGCTCTCTGCCCCCGCGGTTCTTCCTCGACTCGGACCGGCTCATCTCGACAAGAGGCGGCGGTCCTCAGTGCTCTTACTCTTTTCTGTAAAGAGGAGACTGCTGGACCCGCCGCCCAAGTTCGAGCATGAGCCAAGTTCCGAGCGAGGAGATCGCGAGGGGCAGGAACAGCTCCCGAGAGGGGATAAATGGTAAAGAAGCATTGGAACGTCGGAGAAAACCCTCCCAAGAAGGAAAAAAGAGAAAGCAAGAAGCGGACGATTTTCCCCATAACGCTGGAGACGTCCTGGAAGGGGAAAGAGGACGAGCGGAATAAAGGGGGCGGGCCTCCCGATCCGAGGGGCCCAACCACCAAG

Circular Alignment

Generated by CSA

Due an error, we were unable to generate a visualization of the cluster. Find out why →

Blocks

Which aligned sequence regions are where

Due an error, we were unable to generate a visualization of the cluster. Find out why →

Name	Accession	Bases	Type	Family	Genus
Hepatitis delta virus isolate 4	HQ005369.1	1,684	virus	Kolmioviridae	Deltavirus