2021-09-07-ID90-105
The alignment below was constructed using MAFFT's automatic mode and overlayed with a consensus on top to act as the master sequence. Whenever possible, we first performed a cyclic rotation of all cluster members. Learn more →
Alignment
Built with MAFFT, Cyclope, and CSA
>2021-09-07_Cls_ID90_105_con
TTTGGAAAGCACTCCGGCCCGAAGGGTTGAGTAGCTTCCAGAGGGAGACATCCACACGGAGAAGAACAGCGACAACACCCCCCCAGAACCCCTTCAGCGAACAGAGGAGCCTCCCACGCGATAGGAGTAAGCCCATAACGATAGGGGGAGATGCTAGGAGTTAGAGGAGACCAAGCCGAGGAGGAAAGCAAAGAAAGCAACGGGGCTAGCCAGTGGGTGTTCCGCCTCCCGAGAGGGGACGAGTGAGGCTTTTCCCGGGGGGAGCTCCCTATCGTCCCCACATAGCAGAGCCCGGGAGCCCCTTCTAAAGTGACCGGGGGGGGTAGCTTGGAACATAGGAGACGCAGTGGAGCCATGGGATGCCCTTCCCGATTCCGTCCATCCCCACTCCCAGAGGGTCGCCCAGGAATGGCGGGACCCCACTTCAGCAGGGTCCGCGTTCCATCCTTTCTTACCTGATGGCCGGCATGGTCCCAGCCTCCTCGCTGGCGCCGGCTGGGCAACATTCCGAGGGGACCGTCCCCTCGGTAATGGGGAATGGGACCCAAAAATCTCTCTAGCTTCCCAGTGAGAAGCGAGAGAAAACTGGCTCTCCCTTAACCATCCGAGTGGACGTATGTCCTCCTTCGGATGCCCAGGTCGGACCGCGAGGAGGTGGAGATGCCATGCCGACCCGAAGAGGAAAGAAGGACGCGAGACGCAAACCTGTGAGTGGAAACCCGCTTTATTCACTGGGGTCGACAACTCTGAGGAGAGAAGGGAGGATCGGATGGGAAGAGTATATCCTATGGGAATCCCTGCGATCCCCTTATGTCCAGCCCCTCCCCGGTCCGAGTGAAGGGGGACTCCGGAACTCCTTGCATGCTGGGGACGAAGCCGCCCCCGGGCGCTCCCCTCGATCCACCTTCGAGGGGGTTCACACCCCCAACCGGCGGGCCGGCTACTCTTCTTTCCCTTCTCTCGTCATCCTTGGTCAACCTCTTAAGTTCCTCTTCTTCCTCCTTGCTGAGGTGCTTCCCTCCCGCGCTGAGGTGGTTCCTCTTGTTCTCGAGGGCCTTCCTTCGTCGGTGGTCCTCCCTCTCCTTGTCGGTGAAGTCTCCCCTGGAACGCCTCTTCCTAGGTCCGGAGTCTATCTCCATCTGGTCTGTCCGGGCCCTCTTCGCCGGGGGAGCCCCCTCTCCATCCTTATCCTTCTTTCCGAGAATTCCTTTGATGTTTCCCAGCCAGGGGTTCTCGTCCTCAAGTTTCTTGATTTTCTTCTTAACCTTCCGGAGGTCTCTCTCGAGTTCCTCTAACTTCTTTCTTCCATTCACCCACTGCTCGAGGATTTCTTCTCTTCCCCCGCGGTTCTTCTTCGACTCGGACCGGCTCATCTCGACAAGAGGCGGCAGTCCTCAGTACTCTTACTCTTTTCTGTAAAGAGGAGACTGCTGGACCCGCCGCCCAAGTTCGAGCATGGGCCCAGTTCCGAGCGAAGGGATCGCGGGGGGAGGAAGGAAAACCCGAGAGGGAGTGGATGGCAAAGAAGCATTGGAACGTCGGAGGGAATTCTCCCAAGAAGGAAAAAAGAGAAGACAAGAGACGGACGAAACCCCCACGACGCTGGAGACACCTTGGAAGGGGAAAGAGGATGGATGGAAGAAAGGAGGCGGGCCTCCCGATCCGAGGGGCCCGACCACCAAG
>HQ005366.1
TTTGGAAAGCACTCCGGCCCGAAGGGTTGAGTAGCTTCCAGAGGGAGACATCCACACGGAGAAGAACAGCGACAACACCCCCCCAGAACCCCTTCAGCGAACAGAGGAGCCTCCCACGCGATAGGAGTAAGCCCATAACGATAGGGGGAGATGCTAGGAGTTAGAGGAGACCAAGCCGAGGAGGAAAGCAAAGAAAGCAACGGGGCTAGCCAGTGGGTGTTCCGCCTCCCGAGAGGGGACGAGTGAGGCTTTTCCCGGGGGGAGCTCCCTATCGTCCCCACATAGCAGAGCCCGGGAGCCCCTTCTAAAGTGACCGGGGGGGGTAGCTTGGAACATAGGAGACGCAGTGGAGCCATGGGATGCCCTTCCCGATTCCGTCCATCCCCACTCCCAGAGGGTCGCCCAGGAATGGCGGGACCCCACTTCAGCAGGGTCCGCGTTCCATCCTTTCTTACCTGATGGCCGGCATGGTCCCAGCCTCCTCGCTGGCGCCGGCTGGGCAACATTCCGAGGGGACCGTCCCCTCGGTAATGGGGAATGGGACCCAAAAATCTCTCTAGCTTCCCAGTGAGAAGCGAGAGAAAACTGGCTCTCCCTTAACCATCCGAGTGGACGTATGTCCTCCTTCGGATGCCCAGGTCGGACCGCGAGGAGGTGGAGATGCCATGCCGACCCGAAGAGGAAAGAAGGACGCGAGACGCAAACCTGTGAGTGGAAACCCGCTTTATTCACTGGGGTCGACAACTCTGAGGAGAGAAGGGAGGATCGGATGGGAAGAGTATATCCTATGGGAATCCCTGCGATCCCCTTATGTCCAGCCCCTCCCCGGTCCGAGTGAAGGGGGACTCCGGAACTCCTTGCATGCTGGGGACGAAGCCGCCCCCGGGCGCTCCCCTCGATCCACCTTCGAGGGGGTTCACACCCCCAACCGGCGGGCCGGCTACTCTTCTTTCCCTTCTCTCGTCATCCTTGGTCAACCTCTTAAGTTCCTCTTCTTCCTCCTTGCTGAGGTGCTTCCCTCCCGCGCTGAGGTGGTTCCTCTTGTTCTCGAGGGCCTTCCTTCGTCGGTGGTCCTCCCTCTCCTTGTCGGTGAAGTCTCCCCTGGAACGCCTCTTCCTAGGTCCGGAGTCTATCTCCATCTGGTCTGTCCGGGCCCTCTTCGCCGGGGGAGCCCCCTCTCCATCCTTATCCTTCTTTCCGAGAATTCCTTTGATGTTTCCCAGCCAGGGGTTCTCGTCCTCAAGTTTCTTGATTTTCTTCTTAACCTTCCGGAGGTCTCTCTCGAGTTCCTCTAACTTCTTTCTTCCATTCACCCACTGCTCGAGGATTTCTTCTCTTCCCCCGCGGTTCTTCTTCGACTCGGACCGGCTCATCTCGACAAGAGGCGGCAGTCCTCAGTACTCTTACTCTTTTCTGTAAAGAGGAGACTGCTGGACCCGCCGCCCAAGTTCGAGCATGGGCCCAGTTCCGAGCGAAGGGATCGCGGGGGGAGGAAGGAAAACCCGAGAGGGAGTGGATGGCAAAGAAGCATTGGAACGTCGGAGGGAATTCTCCCAAGAAGGAAAAAAGAGAAGACAAGAGACGGACGAAACCCCCACGACGCTGGAGACACCTTGGAAGGGGAAAGAGGATGGATGGAAGAAAGGAGGCGGGCCTCCCGATCCGAGGGGCCCGACCACCAAG
Circular Alignment
Generated by CSA
Due an error, we were unable to generate a visualization of the cluster. Find out why →
Blocks
Which aligned sequence regions are where
Due an error, we were unable to generate a visualization of the cluster. Find out why →
| Name | Accession | Bases | Type | Family | Genus |
|---|---|---|---|---|---|
| Hepatitis delta virus isolate 6 | HQ005366.1 | 1,683 | virus | Kolmioviridae | Deltavirus |