2021-09-07-ID90-104
The alignment below was constructed using MAFFT's automatic mode and overlayed with a consensus on top to act as the master sequence. Whenever possible, we first performed a cyclic rotation of all cluster members. Learn more →
Alignment
Built with MAFFT, Cyclope, and CSA
>2021-09-07_Cls_ID90_104_con
TCGTCGACGTCGACGACGGGTCCCCAGCTGAGCCCCGCCCGGCGGCGCTATCCTGGTCCTCCTAGCTTCGCGGCCTCCGGCGGGGGCCACAGGAACCACCGGTTGCTGCCCACGCCCTCCAGCCAAGGGGATCCAGGGAAACCCCGACCGGGCGCCCGCAGGCGAAACCAGGATCAGGGAAGCTGGCTGGGACCCCCGGGACGAGCCCGCTCGACCCGCCGGACCCAGCCAGCTTCCC---TCCAGGTTTCCCCAGCGGGCGCAACAGGGATTCCAGCTACAGAGTGAAAGAACCGGCCGGGGTTTCCCCGG---CCCCCCGCTGGGGGGCCCCGGGC-----------GTTCCTGCATGGCGCCCCCCGCCGGGGCTCTCCTGGCGACCCG
>MH476217.1
T------CGTCGACGAAGGGTCCTCAGCAGAGCACCGGCAGGAGGCGCTATGCAGGAAC-----GCTAGGGGTCCTCCAGCGGAGGACTGAAGAAACTCCGGTTTCTTCTTTCACTCTGTAGCT------------GGAATCCCTGTT---GCGCTTGCTGGCGAAACCTG---CAGGGAAGCTAGCTGGGTCCCGCTAGTCGAGCGGACTCGTCCCAGCGGTCCCAACCAGTTTTCTTTATCCTATTTTTCCCTGCGGGCGC------------------------------CCGGTCGTGGTTACCCTGGAACCCCCTTGTTTGGAGGCCCTGGGCACCAACTAGTGGTTCCTG--TGGTACTCACCGATAAGACTCACCTGGCGACTCG
>HM211854.1
TCGTCGACGTCGACGACGAGTCGCCAGGTGAGTCTTACCCAGCTTTTCTATCTTTTTCTTCCTAGCTTCGCGGCCTTCGGTGTGAACCACAGGAACCACTAGTTGGTGCCCAGGGCCTCCAAACAAGGGGATCCAGGGAAACCACGACCGGGCGCCCGCAGGGAAAAATAGGATAAAGAAAACTGGTTGGGACCGCTGGGACGAGTCCGCTCGACTAGCGGGACCCAGCTAGCTTCCC---TGCAGGTTTCGCCAGCAAGCGCAACAGGGATTCCAGCTACAGAGTGAAAGAAGAAACCGGAGTTTCTTCAG---TCCTCCGCTGGAGGACCCCTAGC-----------GTTCCTGCATAGCGCCTCCTGCCGGTGCTCTGCTGAGGACCCT
Circular Alignment
Generated by CSA
Due an error, we were unable to generate a visualization of the cluster. Find out why →
Blocks
Which aligned sequence regions are where
| Name | Accession | Bases | Type | Family | Genus |
|---|---|---|---|---|---|
| Australian grapevine viroid isolate F3 | HM211854.1 | 375 | viroid | Pospiviroidae | Apscaviroid |
| Australian grapevine viroid | MH476217.1 | 331 | viroid | Pospiviroidae | Apscaviroid |