2021-09-07-ID90-102
The alignment below was constructed using MAFFT's automatic mode and overlayed with a consensus on top to act as the master sequence. Whenever possible, we first performed a cyclic rotation of all cluster members. Learn more →
Alignment
Built with MAFFT, Cyclope, and CSA
>2021-09-07_Cls_ID90_102_con
AAGGCGGCTCGGAGGAGCGCTTCAGGGATCCCCGGGGAAACCTGGAGCGAACTGGCAAAGGAGTCGCGGCTGGGGAGTCTCCTCAGACAGGAGTAATCCCCGCTGAAACAGTGTTTTCACCCTT-CCTTTCTTCGGGTTTCCTTCCTCTGTGGTCGACACCCTCGCCCGCCTCTCTGCGCTGTCGCTTCGGATACTACCCGGTGGAAACAACTGAAGCTCCCGAGAACCGCTTTTTCTCTATCTTGCTGGCGCAGGGGCGAGGGTGGAAAGCCCTGGAACCCGCTGGATGGGTCCCTCGGGATCTTTTCCTTGTGGTTCCTGTGGTTCACACCTGACCTCCAGCCCAGGAAAGAAAAAAGA
>NC_003637.1
AAGGCGGCTCGGAGGAGCGCTTCAGGGATCCCCGGGGAAACCTGGAGCGAACTGGCAAAGGAGTCGCGGCTGGGGAGTCTCCTCAGACAGGAGTAATCCCCGCTGAAACAGGGTTTTCACCCTT-CCTTTCTTCGGGTTTCCTTCCTCTGTGGTCGACACCCTCGCCCGCCTCTCTGCGCTGTCGCTTCGGATACTACCCGGTGGAAACAACTGAAGCTCCCGAGAACCGCTTTTTCTCTATCTTGCTGGCGCAGGGGCGAGGGTGGAAAGCCCTGGAACCCGCTGGATGGGTCCCTCGGGATCTTTTCCTTGTGGTTCCTGTGGTTCACACCTGACCTCCAGCCCAGGAAAGAAAAAAGA
>KP863710.1
AAGGCGGCTCGGAGGAGCGCTTCAGGGATCCCCGGGGAAACCTGGAGCGAACTGGCAAAGGAGTCGCGGCTGGGGAGTCTCCTCAGACAGGAGTAATCCCCGCTGAAACAGTGTTTTCACACTT-CCTTTCTTCGGGTTTCCTTCCTCTGTGGTCGACACCCTCGCCCGCCTCTCTGCGCTGTCGCTTCGGCTACTACCCGGTGGAAACAACTGAAGCTCCCGAGAACCGCTTTTTCTCTATCTTGCTGGCGCAGGGGCGAGGGTGGAAAGCCCTGGAACCCGCTGGATGGGTCCCTCGGGATCTTTTCCTTGTGGTTCCTGTGGTTCACACCTGACCTCCAGCCCAGGAAAGAAAAAAGA
>KM403386.1
AAGGCGGCTCGGAGGAGCGCTTCAGGGATCCCCGGGGAAACCTGGAGCGAACTGGCAAAGGAGTCGCGGCTGGGGAGTCTCCTCAGACAGGAGTAATCCCCGCTGAAACAGTGTTTTCACACTT-CCTTTCTTCGGGTTTCCTTCCTCTGTGGTCGACACCCTCGCCCGCCTCTCTGCGCTGTCGCTTCGGATACTACCCGGTGGAAACAACTGAAGCTCCCGAGAACCGCTTTTTCTCTATCTTGCTGACGCCGGGGCGAGGGTGGAAAGCCCTGGAACCCCTGAAAAGGGTCCCTCGGGATCTTTTCCTTGTGGTTCCTGTGGTTCACACCTGACCTCCTGCTCAGAAAAGAAAAAG--
>KF683198.1
AAGGCGGCTCGGAGGAGCGCTTCAGGGATCCCCGGGGAAACCTGGAGCGAACTGGCAAAGGAGTCGCGGCTGGGGAGTCTCCTCAGACAGGAGTAATCCCCGCTGAAACAGTGTTTTCACACTT-CCTTTCTTCGGGTTTCCTTCCTCTGTGGTCGACACCCTCGCCCGCCTCTCTGCGCTGTCGCTTCGGATACTACCCGGTGGAAACAACTGAAGCTCCCGAGAACCGCTTTTTCTCTATCTTGCTGGCGCAGGGGCGAGGGTGGAAAGCCCTGGAACCCGCTGGATGGGTCCCTCGGGATCTTTTCCTTGTGGTTCCTGTGGTTCACACCTGACCTCCAGCCCAGGAAAGAAAAAAGA
>HG739081.1
AAGGCGGCTCGGAGGAGCGCTTCAGGGATCCCCGGGGAAACCTGGAGCGAACTGGCAAAGGAGTCGCGGCTGGGGAGTCTCCTCAGACAGGAGTAATCCCCGCTGAAACAGGGTTTTCACCCTTCCCTTTCTTCGGGTTTCCTTCCTCTGTGGTCGACACCCTCGCCCGCCTCTCTGCGCTGTCGCTTCGGATACTACCCGGTGGAAACAACTGAAGCTCCCGAGAACCGCTTTTTCTCTATCTTGCTGGCGCAGGGGCGAGGGTGGAAAGCCCTGGAACCCGCTGGATGGGTCCCTCGGGATCTTTTCCTTGTGGTTCCTGTGGTTCACACCTGACCTCCAGCCCAGGAAAGAAAAAAGA
Circular Alignment
Generated by CSA
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Blocks
Which aligned sequence regions are where
